skultrafast.kinetic_model

This module helps to build a transfer matrix and applying it to an DAS.

Module Contents

Classes

Transition	Represents a transtion between comparments.
Model	Helper class to make a model

Functions

get_comparments(list_trans)	Getting a list of transtions, return the compartments
get_symbols(list_trans)	Return the used symbols

class skultrafast.kinetic_model.Transition(from_comp, to_comp, rate=None, qy=None)

Bases: object

Represents a transtion between comparments.

class skultrafast.kinetic_model.Model

Bases: object

Helper class to make a model

add_transition(from_comp, to_comp, rate=None, qy=None)

Adds an transition to the model.

Parameters:

• from_comp (str) – Start of the transition

• to_comp (str) – Target of the transition

• rate (str, optional) – Name of the associated rate, by default None, which generates a default name.

• qy (str of float, optional) – The yield of the transition, by default 1

build_matrix()

Builds the n x n k-matrix

build_mat_func()

get_compartments()

make_diff_equation()

get_trans(y0, taus, t)

Return the solution

skultrafast.kinetic_model.get_comparments(list_trans)

Getting a list of transtions, return the compartments

skultrafast.kinetic_model.get_symbols(list_trans)

Return the used symbols